O2k-Publications: Topics: Difference between revisions
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Revision as of 14:57, 11 November 2016
O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (363 entries) 363 516 2 Exercise physiology;nutrition;life style 756 1050 3 Comparative MiP;environmental MiP 325 477 4 Pharmacology;toxicology 844 1041 5 mt-Biogenesis;mt-density 248 331 6 Genetic knockout;overexpression 655 725 7 Instruments;methods 273 14572<ul><li>"[MiP area" contains a listed "[" character as part of the property label and has therefore been classified as invalid.</li> <!--br--><li>The part "Instruments;methods" of the query was not understood.Results might not be as expected.</li> <!--br--><li>The part "]]" of the query was not understood.Results might not be as expected.</li></ul>
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 275 417 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 356 514 5 Cardiovascular 207 289 6 COPD 10 13 7 Diabetes 350 468 8 Inherited 64 99 9 Infectious 50 69 10 Myopathy 77 89 11 Neurodegenerative 169 235 12 Obesity 255 423 13 Parkinson's 68 105 14 Sepsis 74 85 15 Other 292 364
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 93 156 2 Cryopreservation 41 67 3 Hypoxia 117 229 4 Ischemia-reperfusion 327 434 5 Mitochondrial disease 150 211 6 Oxidative stress;RONS 583 841 7 Permeability transition 71 96 8 Temperature: hypothermia; hyperthermia] 92 113
Organisms
- Mammals
- Model organisms
- Chicken (ยป Birds)
- Zebrafish (ยป Fishes)
- Drosophila (ยป Hexapods)
- Caenorhabditis elegans (ยป Nematodes)
- Artemia (ยป Crustaceans)
- Saccharomyces cerevisiae (ยป Fungi)
- Comparative MiP
- Non-mammals
- Birds (ยป Chicken)
- Reptiles - turtles, lizards, snakes, crocodiles, alligators
- Amphibians - frogs, toads, salamanders
- Fishes - bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); ยป Zebrafish
- Hexapods - insects, springtails; ยป Drosophila
- Crustaceans - crabs, shrimp, barnacles, etc.; ยป Artemia
- Annelids - polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches
- Molluscs - gastropods, cephalopods, bivalves
- Nematodes ยป Caenorhabditis elegans
- Other invertebrates - urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ...
- Fungi - yeast, molds, mushrooms, etc.; ยป Saccharomyces cerevisiae
- Plants
- Protists - amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc.
- Eubacteria - true bacteria, cyanobacteria, spirochetes
- Archaea - archaebacteria
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 188 263 2 Genital 92 123 3 Heart 724 936 4 Kidney 150 183 5 Liver 646 841 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1106 1370
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 259 294 3 Fibroblast 207 271 4 Islet cell;pancreas;thymus 55 67 5 Lymphocyte 58 76 6 Platelet 121 151 7 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 43 50 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Intact organism 53 248 2 Intact organ 23 38 3 Intact cells 1165 1314 4 Permeabilized cells 716 754 5 Permeabilized tissue 1115 1209 6 Homogenate 376 420 7 Isolated mitochondria 1264 1571 8 SMP 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase 21 27 2 Complex I 461 607 3 Complex II;succinate dehydrogenase 412 639 4 Complex III 301 363 5 Complex IV;cytochrome c oxidase 408 499 6 Complex V;ATP synthase 220 267 7 Inner mt-membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 49 78 10 TCA cycle and matrix dehydrogenases 82 109 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP 152 207 2 ATP production 78 123 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 106 179 6 Coupling efficiency;uncoupling 82 163 7 Cyt c 42 56 8 Fatty acid 127 159 9 Flux control 54 86 10 Inhibitor 131 169 11 Ion;substrate transport 65 116 12 mt-Membrane potential 118 181 13 Oxygen kinetics 107 148 14 Q-junction effect 13 56 15 Redox state 58 98 16 Substrate 181 236 17 Temperature 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler 55 70
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2867 3096 2 R ROUTINE respiration Physiological state, intact cells 894 981 3 E Electron transfer system capacity Maximal noncoupled respiration 0 0 4 L LEAK respiration Resting state, non-phosphorylating respiration 2613 2772
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 609 753 2 N N-pathway control state NADH-linked, level 4 2475 2623 3 S S-pathway control state Succinate-linked, level 3 1686 1794 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 157 183 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 702 730 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1580 1637 8 Other 133 149 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1521 1573
MiPMap combinations - examples
- Examples for specific combinations
- O2k-Publications: Human skeletal muscle โขโข O2k-Publications: Human heart โขโข O2k-Publications: Skeletal muscle - human vs mouse
- Browse data
O2k-Manuals and protocols and specific instrumental applications
- O2k-Manual โขโข Instruments;methods โขโข TIP2k โขโข O2k-Fluorometryโขโข O2k-Fluorometry - Fluorophoresโขโข TPP + ISE-Module โขโข O2k-pH ISE-Module โขโข Theoretical background โขโข O2k-Protocols โขโข PBI Shredder