Difference between revisions of "O2k-Publications: Topics"
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Revision as of 14:15, 19 December 2016
O2k-Publications: Topics
- Mitochondria and cell research
Mitochondrial physiology: MiP areas
# O2k-Publications MitoPedia: Comment O2k Total 1 mt-Medicine (363 entries) 363 516 2 Exercise physiology;nutrition;life style 755 1049 3 Comparative MiP;environmental MiP 324 476 4 Pharmacology;toxicology 843 1040 5 mt-Biogenesis;mt-density 248 331 6 Genetic knockout;overexpression 653 722 7 Instruments;methods 273 416
Pathological states
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Aging;senescence 275 417 2 Alzheimer's 71 94 3 Autism 7 11 4 Cancer 356 514 5 Cardiovascular 207 289 6 COPD 10 13 7 Diabetes 348 466 8 Inherited 64 99 9 Infectious 50 69 10 Myopathy 77 89 11 Neurodegenerative 169 235 12 Obesity 254 421 13 Parkinson's 67 104 14 Sepsis 74 85 15 Other 289 361
Stress conditions
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Cell death White, brown, beige fat tissue 93 156 2 Cryopreservation 41 67 3 Hypoxia 117 229 4 Ischemia-reperfusion 326 433 5 Mitochondrial disease 150 211 6 Oxidative stress;RONS 581 839 7 Permeability transition 71 96 8 Temperature: hypothermia; hyperthermia] 91 112
Organisms
- Mammals
- Model organisms
# O2k-Publications MitoPedia: Comment O2k Total 1 Chicken (» Birds) 5 7 2 Zebrafish (» Fishes) 15 22 3 Drosophila (» Hexapods) 65 91 4 Caenorhabditis elegans (» Nematodes) 24 33 5 Artemia (» Crustaceans) 12 19 6 Saccharomyces cerevisiae (» Fungi) 61 88 7 Comparative MiP 324 476
- Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total 1 Birds (» Chicken) 15 27 2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18 3 Amphibians frogs, toads, salamanders 10 15 4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153 5 Hexapods insects, springtails; » Drosophila 34 43 6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40 7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20 8 Molluscs gastropods, cephalopods, bivalves 25 42 9 Nematodes » Caenorhabditis elegans 5 11 10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21 11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 52 63 12 Plants 29 58 13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 42 59 14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 51 15 Archaea archaebacteria 0 7
Tissues and cells
- Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Fat White, brown, beige fat tissue 187 262 2 Genital 92 123 3 Heart 723 935 4 Kidney 150 183 5 Liver 644 839 6 Lung;Gill 59 82 7 Nervous system 606 732 8 Skeletal muscle 1102 1366
- Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Blood cells 254 320 2 Endothelial;epithelial;mesothelial cell 259 294 3 Fibroblast 206 270 4 Islet cell;pancreas;thymus 54 66 5 Lymphocyte 58 76 6 Platelet 121 151 7 Stem cells 36 48
- Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 CHO 14 16 2 HEK 95 116 3 HeLa 38 55 4 Neuroblastoma 42 49 5 HUVEC 19 22 6 Macrophage-derived cell lines 26 37 7 Other cells and cell lines 292 338
Preparations
# O2k-Publications MitoPedia: Comment O2k Total 1 Intact organism 53 248 2 Intact organ 23 38 3 Intact cells 1162 1311 4 Permeabilized cells 714 752 5 Permeabilized tissue 1113 1207 6 Homogenate 375 419 7 Isolated mitochondria 1259 1566 8 SMP Submitochondrial particles 10 28 9 Chloroplasts 2 10 10 Enzyme 39 102 11 Oxidase and biochemical oxidation 39 49
Enzymes
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 Adenine nucleotide translocase ANT 21 27 2 Complex I CI 460 606 3 Complex II;succinate dehydrogenase CII 410 637 4 Complex III CIII 300 362 5 Complex IV;cytochrome c oxidase CIV 405 496 6 Complex V;ATP synthase CV 219 266 7 Inner mt-membrane transporter 31 44 8 Marker enzyme 58 84 9 Supercomplex 48 77 10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108 11 Uncoupling protein 60 66
Regulation
- Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total 1 ADP ADP kinetics 152 207 2 ATP production 78 123 3 Aerobic glycolysis 49 94 4 Amino acid 9 20 5 Calcium 106 179 6 Coupling efficiency;uncoupling 82 163 7 Cyt c Cytochrome c 42 56 8 Fatty acid FA substrate kinetics 127 159 9 Flux control 54 86 10 Inhibitor Inhibitor kinetics 131 169 11 Ion;substrate transport 64 115 12 mt-Membrane potential 116 179 13 Oxygen kinetics 107 148 14 Q-junction effect 13 56 15 Redox state 58 98 16 Substrate Fuel substrate kinetics 181 236 17 Temperature Temperature dependence 73 100 18 Threshold;excess capacity 27 30 19 Uncoupler Uncoupler kinetics 55 70
Coupling control states
# O2k-Publications MitoPedia: Coupling control states Comment O2k Total 1 P OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2858 3087 2 R ROUTINE respiration Physiological state, intact cells 892 979 3 E Electron transfer system capacity Maximal noncoupled respiration 0 0 4 L LEAK respiration Resting state, non-phosphorylating respiration 2603 2762
Pathway control states
# O2k-Publications MitoPedia: Pathway control states Comment O2k Total 1 F F-pathway control state Fatty acid oxidation, level 5 607 751 2 N N-pathway control state NADH-linked, level 4 2467 2615 3 S S-pathway control state Succinate-linked, level 3 1679 1787 4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 156 182 5 DQ Duorquinol-linked, level 2 26 31 6 CIV Complex IV single step Ascorbate & TMPD, level 1 700 728 7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1574 1631 8 Other 131 147 9 ROX Residual oxygen consumption includes non-mitochondrial respiration 1516 1568
MiPMap combinations - examples
- Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total 1 O2k-Publications: Human skeletal muscle 1102 1366 2 O2k-Publications: Human heart 723 935 3 O2k-Publications: Skeletal muscle - human vs mouse 39 48
- Browse data
O2k-Manuals and protocols and specific instrumental applications
# O2k-Publications MitoPedia: Comment O2k Total 1 Oxygraph-2k 0 4699 2 TIP2k 44 44 3 O2k-Fluorometry 348 354 4 O2k-pH ISE-Module 4 5 5 Nitric Oxide 8 8 6 TPP + ISE-Module 54 58 7 Calcium 11 11 8 O2k- Spectrophotometer 8 8 9 O2k-Manual 24 25 8 O2k-Protocol 71 93 9 Theoretical background 13 69 10 Instruments;methods 273 416 11 O2k-Fluorometry - Fluorophores 22 22 12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total 1 Twin-Flow respirometry 0 21 2 Separate DatLab applications 29 35