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O2k-Publications: Topics

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O2k-Publications: Topics

Mitochondria and Cell Research - the Oroboros Ecosystem
O2k-Publications: chronological
Publications in the MiPMap


» Please send us references on your Oroboros O2k applications for the list of O2k-Publications, which is updated by Bioblast editors and active wiki users. → Contact: Mario Plangger
» O2k-Publications alert - » Recent O2k-Publications
» O2k-briefs
» O2k-Publications - chronological: 4608


Mitochondrial physiology: MiP areas

# O2k-Publications MitoPedia: Comment O2k Total
1 mt-Medicine (361 entries) 361 512
2 Exercise physiology;nutrition;life style 735 1021
3 Comparative MiP;environmental MiP 319 471
4 Pharmacology;toxicology 832 1015
5 mt-Biogenesis;mt-density 246 329
6 Genetic knockout;overexpression 634 702
7 Instruments;methods 272 411


Pathological states

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Aging;senescence 269 407
2 Alzheimer's 70 93
3 Autism 7 11
4 Cancer 351 486
5 Cardiovascular 205 278
6 COPD 9 12
7 Diabetes 344 456
8 Inherited 62 97
9 Infectious 49 68
10 Myopathy 75 86
11 Neurodegenerative 167 232
12 Obesity 251 412
13 Parkinson's 67 103
14 Sepsis 74 84
15 Other 281 353


Stress conditions

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Cell death White, brown, beige fat tissue 92 155
2 Cryopreservation 41 65
3 Hypoxia 111 214
4 Ischemia-reperfusion 323 429
5 Oxidative stress;RONS 575 827
6 Permeability transition 71 96
7 Temperature: hypothermia; hyperthermia 91 112


Organisms

Mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Human 1422 2027
2 Pig 88 102
3 Horse 27 34
4 Bovines 23 75
5 Cat 2 4
6 Dog 12 30
7 Rabbit 17 22
8 Mouse 1340 1565
9 Rat 868 1120
10 Guinea pig 23 36
11 Other mammals including only mammals that are not listed as mammalian species above 52 83
Model organisms
# O2k-Publications MitoPedia: Comment O2k Total
1 Chicken Birds) 5 7
2 Zebrafish Fishes) 14 21
3 Drosophila Hexapods) 63 86
4 Caenorhabditis elegans Nematodes) 24 32
5 Artemia Crustaceans) 11 18
6 Saccharomyces cerevisiae Fungi) 61 88
7 Comparative MiP 319 471


Non-mammals
# O2k-Publications MitoPedia: Comment O2k Total
1 Birds Chicken) 15 27
2 Reptiles turtles, lizards, snakes, crocodiles, alligators 13 18
3 Amphibians frogs, toads, salamanders 10 15
4 Fishes bony fishes, carilaginous fishes (sharks, rays, skates) and jawless fishes (hagfish, lampreys); » Zebrafish 116 153
5 Hexapods insects, springtails; » Drosophila 32 41
6 Crustaceans crabs, shrimp, barnacles, etc.; » Artemia 19 40
7 Annelids polychaetes, e.g. lugworm Arenicola marina, oligochaetes, leeches 3 20
8 Molluscs gastropods, cephalopods, bivalves 25 42
9 Nematodes » Caenorhabditis elegans 5 11
10 Other invertebrates urocordates (e.g. ascidians, sea squirts); cephalochordates (amphioxus, lancelets); echinoderms; chelicerates (e.g. spiders, scorpions, horseshoe crabs); myriapods (millipedes, centipedes); gastrotrichs; rotifers; ctenophores; nemerteans; tardigrades; platyhelminthes; cnidaria; porifera; ... 11 21
11 Fungi yeast, molds, mushrooms, etc.; » Saccharomyces cerevisiae 51 62
12 Plants 28 55
13 Protists amoebas, ciliates, trypanosomes, dinoflagellates, diatoms, green algae, etc. 40 57
14 Eubacteria true bacteria, cyanobacteria, spirochetes 25 47
15 Archaea archaebacteria 0 7


Tissues and cells

Tissues - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Fat White, brown, beige fat tissue 184 257
2 Genital 92 123
3 Heart 715 922
4 Kidney 147 179
5 Liver 633 825
6 Lung;Gill 58 79
7 Nervous system 601 723
8 Skeletal muscle 1080 1342


Cell types - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Blood cells 247 313
2 Endothelial;epithelial;mesothelial cell 254 289
3 Fibroblast 199 263
4 Islet cell;pancreas;thymus 54 66
5 Leukemia 22 25
6 Lymphocyte 56 74
7 Platelets 120 148
8 Stem cells 36 48


Cell lines - alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 CHO 13 15
2 HEK 93 114
3 HeLa 37 54
4 Neuroblastoma 42 48
5 HUVEC 19 22
6 Macrophage-derived cell lines 26 36
7 Other cells and cell lines 292 338


Preparations

# O2k-Publications MitoPedia: Comment O2k Total
1 Living organism 52 247
2 Intact organ 23 38
3 Living cells 1131 1276
4 Permeabilized cells 699 736
5 Permeabilized tissue 1094 1186
6 Homogenate 370 410
7 Isolated mitochondria 1239 1541
8 SMP Submitochondrial particles 10 28
9 Chloroplasts 3 11
10 Enzyme 39 84
11 Oxidase and biochemical oxidation 38 48


Enzymes

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 Adenine nucleotide translocase ANT 21 27
2 Complex I CI 457 586
3 Complex II;succinate dehydrogenase CII 409 634
4 Complex III CIII 299 359
5 Complex IV;cytochrome c oxidase CIV 404 482
6 Complex V;ATP synthase CV 219 264
7 mt-Inner membrane transporter 31 44
8 Marker enzyme 58 84
9 Supercomplex 48 74
10 TCA cycle and matrix dehydrogenases Tricarboxylic acid cycle 81 108
11 Uncoupling protein 60 66


Regulation

Alphabetical order
# O2k-Publications MitoPedia: Comment O2k Total
1 ADP ADP kinetics 152 206
2 ATP production 79 120
3 Aerobic glycolysis 49 94
4 Amino acid 9 20
5 Calcium 104 177
6 Coupling efficiency;uncoupling 81 158
7 Cyt c Cytochrome c 42 56
8 Fatty acid FA substrate kinetics 126 157
9 Flux control 54 86
10 Inhibitor Inhibitor kinetics 131 168
11 Ion;substrate transport 63 111
12 mt-Membrane potential Mitochondrial membrane potential
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


113 172
13 Oxygen kinetics 105 145
14 Q-junction effect 13 56
15 Redox state 54 94
16 Substrate Fuel substrate kinetics 181 234
17 Temperature Temperature dependence 73 99
18 Threshold;excess capacity 27 30
19 Uncoupler Uncoupler kinetics 55 70


Coupling-control

# O2k-Publications MitoPedia: Coupling-control states Comment O2k Total
1 P OXPHOS OXPHOS capacity Oxidative phosphorylation capacity, saturating [ADP] 2801 3026
2 R ROUTINE ROUTINE respiration Physiological state, living cells 867 952
3 E ET ET capacity Maximal noncoupled respiration 2007 2112
4 L LEAK LEAK respiration Resting state, non-phosphorylating respiration 2539 2693


Pathway control

# O2k-Publications MitoPedia: Electron-transfer-pathway states Comment O2k Total
1 F F-pathway control state Fatty acid oxidation, level 5 591 729
2 N N-pathway control state NADH-linked, level 4 2411 2556
3 S S-pathway control state Succinate-linked, level 3 1641 1744
4 Gp Gp-pathway control state Glycerophosphate-linked, level 3 151 175
5 DQ Duorquinol-linked, level 2 25 30
6 CIV Complex IV single step Ascorbate & TMPD, level 1 686 713
7 NS NS-pathway control state Convergent CI- and CII-linked electron flow to the Q-junction 1537 1592
8 Other 130 146
9 ROX ROX Residual oxygen consumption includes non-mitochondrial respiration 1478 1530


Additional labels

# O2k-Publications MitoPedia: Comment O2k Total
1 AmR Amplex UltraRed Extrinsic fluorophore for measurement of hydrogen peroxide production 223 228
2 MgG Magnesium Green Extrinsic fluorophore for measurement of ATP production 17 18
3 CaG Calcium Green Extrinsic fluorophore for measurement of Ca2+ production 8 9
4 PBMCs Peripheral blood mononuclear cell (PBMC) 49 54
5 Photosynthesis Photosynthesis 4 53
6 Tissue normoxia Normoxia 17 27


MiPMap combinations - examples

Examples for specific combinations
# O2k-Publications MitoPedia: Comment O2k Total
1 O2k-Publications: Human skeletal muscle 1080 1342
2 O2k-Publications: Human heart 715 922
3 O2k-Publications: Skeletal muscle - human vs mouse 38 47
Browse data


O2k-Manuals and protocols and specific instrumental applications

# O2k-Publications MitoPedia: Comment O2k Total
1 Oxygraph-2k 4608 4608
2 TIP2k 44 44
3 O2k-Fluorometry 336 341
4 O2k-pH ISE-Module pH
Questions.jpg


Click to expand or collaps


4 5
5 Nitric Oxide 8 8
6 TPP+ O2k-ISE Module Tetraphenylphosphonium
Questions.jpg


Click to expand or collaps
Bioblast links: Force and membrane potential - >>>>>>> - Click on [Expand] or [Collapse] - >>>>>>>
Fundamental relationships
» Force
» Affinity
» Flux
» Advancement
» Advancement per volume
» Stoichiometric number
mt-Membrane potential and protonmotive force
» Protonmotive force
» Mitochondrial membrane potential
» Chemical potential
» Faraday constant
» Format
» Uncoupler
O2k-Potentiometry
» O2k-Catalogue: O2k-TPP+ ISE-Module
» O2k-Manual: MiPNet15.03 O2k-MultiSensor-ISE
» TPP - O2k-Procedures: Tetraphenylphosphonium
» Specifications: MiPNet15.08 TPP electrode
» Poster
» Unspecific binding of TPP+
» TPP+ inhibitory effect
O2k-Fluorometry
» O2k-Catalogue: O2k-FluoRespirometer
» O2k-Manual: MiPNet22.11 O2k-FluoRespirometer manual
» Safranin - O2k-Procedures: MiPNet20.13 Safranin mt-membranepotential / Safranin
» TMRM - O2k-Procedures: TMRM
O2k-Publications
» O2k-Publications: mt-Membrane potential
» O2k-Publications: Coupling efficiency;uncoupling


54 58
7 Ca2+ O2k-ISE Module 10 10
8 O2k-Spectrophotometer 8 8
9 O2k-Manual 21 22
8 O2k-Protocol 62 79
9 Theoretical background 13 69
10 Instruments;methods 272 411
11 O2k-Fluorometry - Fluorophores 22 22
12 PBI Shredder Homogenate preparation 20 22
# O2k-Publications MitoPedia: Comment O2k Total
1 Twin-Flow respirometry 0 21
2 Separate DatLab applications 29 35